Chemical Biology: Applications and Techniques by Banafshe? Larijani - Colin. A. Rosser - Rudiger Woscholski

By Banafshe? Larijani - Colin. A. Rosser - Rudiger Woscholski

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For industry’s molecular engineers, the expediency with which the synthesis could be carried out held center stage: a concept which new graduates did not have to come to terms with until their entry into their industrial careers. Meanwhile, the constructive tension between elegance and efficiency was usurped by the dream of the perfect reaction and the ideal synthesis. The perfect reaction can be summarized in Derek Burton’s utopian view: 100%yield, 100%stereoselectivity [25a]. B. M. Trost [25b]seeks to advance toward the ideal through observance of atom-economy, and M.

86 % Scheme 1-20 Collection of formulae relevant to a synthesis of the biologically active candidate 80. coevolution between them and the host may occur. There is, however, a tremendous difference between a static variation and the immune system. While the processes of preparation and screening of a static variation were designed by chemists, what happens in immunology was not designed but rather evolved. The preparation of a dynamic variation (to be described in the following section) is somewhat in between the two extremes, though very much closer to the designer's end.

Molecular encoding: During each step of the construction of a focused variation of tripeptides (see Scheme 1-17)tagging molecules are attached to the beads Scheme 1-18 21 building blocks for the preparation o f t h e 343 tripeptides of Scheme 1-17 (building blocks 6,10, and 11 were used as racemates). 21) A divergent approach would require 399 + + (7’ 7’ 7 3 ) reaction steps, a serial approach even 1029 (73+ 7’t 7’) reaction steps to reach the same 343 variants [63, 871. 4 Bringing Chemical Solutions t o Biological Problems that encode both the step number (one through 21) and the reagent (amino acid or acid chloride, respectively) used in that step.

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